PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033321.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 256aa    MW: 27962.6 Da    PI: 4.8857
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033321.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.11.7e-55471501101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   ie+++dfknh+lPlarikki+kadedv misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdi
  CCG033321.1  47 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVPMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 144
                  89*****998899************************************************************************************* PP

        NF-YC  96 vprdel 101
                  vprde+
  CCG033321.1 145 VPRDEI 150
                  ****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.86E-3426141IPR009072Histone-fold
PfamPF008085.0E-2069132IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.4E-3670147IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDNTNTNHQP PSTAYPPHST STTPPPPPPG APSSAPFHHL LQQQQQQLQM FWSYQRQEIE  60
QVNDFKNHQL PLARIKKIMK ADEDVPMISA EAPILFAKAC ELFILELTIR SWLHAEENKR  120
RTLQKNDIAA AITRTDIFDF LVDIVPRDEI REEAAGLGGI VGATASGVPY YSPPMGQPAA  180
AAGGMMIGRP AVDPATGVYV QPPSQAWQSV WQTAAAEDGS YGSGGASGGQ GFLFLLFFCT  240
YFVDLERGFC CSEVVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-434814719119HapE
4g92_C3e-434814719119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125RRTLQKN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166830.0AC216683.1 Populus trichocarpa clone POP028-P04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044135.11e-171PREDICTED: nuclear transcription factor Y subunit C-4-like isoform X3
SwissprotQ9FMV51e-107NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLB9IFC71e-130B9IFC7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s10940.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110713038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.16e-89nuclear factor Y, subunit C1